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Contents

Official guidance
Self Assessment Manual

SAM110000 · Repayments: issue repayment

  • SAM110001 · Introduction
  • SAM110005 · Allocated payment or credit
  • SAM110010 · Automatic freestanding credits
  • SAM110020 · Automatic repayments
  • SAM110030 · BACS repayment rejection
  • SAM110031 · BACS rejection notified by HMRC Finance (Action Guide)
  • SAM110035 · Balancing charge credit (BCC)
  • SAM110040 · Cancellation of a repayment
  • SAM110041 · Cancellation of a repayment (Action Guide)
  • SAM110050 · Class 4 NIC refunds
  • SAM110060 · PAYE repayment system
  • SAM110070 · Effective dates of payment
  • SAM110080 · Freestanding credits
  • SAM110081 · Freestanding credits (Action Guide menu)
  • SAM110082 · Creating a freestanding credit (Action Guide)
  • SAM110083 · Cancelling / amending a freestanding credit (Action Guide)
  • SAM110085 · Freestanding credit created manually from a brought back claim (Schedule 1B TMA 1970)
  • SAM110086 · Freestanding credit created manually from a ‘stand alone’ claim for error or mistake relief (S33 TMA 1970) or overpayment relief (Schedule 1AB TMA 1970)
  • SAM110087 · Freestanding credit created manually from a ‘stand alone’ claim made after the time limit for amending the return (Schedule 1A TMA 1970)
  • SAM110088 · Freestanding credit created manually from a ‘stand alone’ claim or a claim on a return to carry back losses or pension contributions, or a claim on a return for farmer’s averaging (Schedule 1B TMA 1970). (Not EIS Def
  • SAM110089 · Freestanding credit created manually on the SA record from a PAYE / CODA overpayment, including pre-SA SC60 deductions
  • SAM110090 · In-year repayments to pension schemes
  • SAM110100 · In-year repayments to subcontractors
  • SAM110101 · In-year repayments to subcontractors (Action Guide)
  • SAM110110 · Local office payable orders
  • SAM110111 · Local office payable orders (Action Guide)
  • SAM110115 · Method of repayment
  • SAM110116 · Repay to card
  • SAM110120 · Missing repayments
  • SAM110121 · Missing repayments (Action Guide menu)
  • SAM110122 · Missing BACS repayment (Action Guide)
  • SAM110123 · Missing payable order (Action Guide)
  • SAM110124 · Missing card repayment (Action Guide)
  • SAM110125 · 'no repayment' signal
  • SAM110130 · Nominations and assignments
  • SAM110131 · Nominations and deeds / letters of assignment (Action Guide menu)
  • SAM110132 · Assignment received (Action Guide)
  • SAM110133 · Taxpayer repaid in error (Action Guide)
  • SAM110140 · Non-automatic repayments
  • SAM110141 · Non-automatic repayments (Action Guide menu)
  • SAM110142 · Repayment of an overpayment (Action Guide)
  • SAM110143 · Repayment of a payment made in error (Action Guide)
  • SAM110144 · Reallocation of a payment allocated in error
  • SAM110160 · Overpayments in closed cases
  • SAM110170 · Permanent cessation
  • SAM110180 · Permanent overpayments
  • SAM110185 · R002 repayment notice
  • SAM110187 · Reallocation or repayment of repayment supplement
  • SAM110190 · Repayment authorisation (or cancellation)
  • SAM110200 · Repayment donated to charity (facility withdrawn for all tax years from April 2012)
  • SAM110201 · Repayment donated to charity (facility withdrawn for all tax years from April 2012) (Action Guide)
  • SAM110205 · Repayment inhibitions
  • SAM110210 · Repayment prior to transfer into SA
  • SAM110220 · Repayment set-off (BCC and FSC)
  • SAM110225 · Repayment status
  • SAM110227 · Repayments to trusts and estates
  • SAM110230 · S144 TCGA adjustments
  • SAM110231 · S144 TCGA adjustments by the creation of a freestanding credit
  • SAM110240 · Schedule 1B claims - additional repayments
  • SAM110241 · Schedule 1B claims - additional repayments (Action Guide)
  • SAM110245 · Special action in BACS repayment cases
  • SAM110250 · Structured action requests - SARs
  • SAM110260 · Unallocated payment on SA
  • SAM110270 · In-year repayments - small pension taken as a lump sum payment (formerly known as trivial commutations) and Flexible Pension Payments
  • SAM110271 · In-year repayments - small pension taken as a lump sum (formerly known as trivial commutations) and Flexible Pension Payments (Action Guide)
  1. Repayments: issue repayment: contents
  2. Repayments: issue repayment: PAYE repayment system

SAM110060 | Repayments: issue repayment: PAYE repayment system

From HM Revenue & Customs · Self Assessment Manual

The PAYE repayment system will continue to be used where the SA or OAS repayment system is not appropriate. This will occur where, for instance

  • An unemployment repayment is to be made through PAYE

Note: Including ‘in-year’ unemployment repayment requests from taxpayers in SA.

  • A PAYE cessation repayment is requested prior to transfer into SA. Note: For customers already in SA no in-year repayment can be made except where the customer has become self employed, and the claim is made after an SA record has been set up, or reactivated. In these cases the PAYE cessation repayment should be made by creating a freestanding credit and repaid through the SA record.

  • For cases where the taxable income exceeds £100,000, follow the guidance at PAYE94025. For all other SA criteria cases, no ‘in-year’ repayment can be made.

Note: This will only apply to in-year repayment requests and is not appropriate where an overpayment arises from the SA return.

Repayments made outside of SA will be subject to existing clerical and supervisory procedures.

Where repayment or set-off has been made using the PAYE repayment system

  • Use SA function AMEND TAXPAYER SIGNALS to set the ‘No Repayment’ signal. (The setting of this signal will prevent an automatic repayment and possible over-repayment being made when the return is received)

  • Use SA function MAINTAIN SA NOTES to enter a brief note recording the fact that a repayment / set-off has been made

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